EST Expression (ESTs/100,000 ESTs) of Developing Oil Seeds, Based on Pyrosequencing
(For further information, see:
Troncoso-Ponce MA, Kilaru A, et al (2011) Comparative deep transcriptional profiling of four developing
oilseeds. Plant J)
|
|---|
| Brassica napus Embryo (Em) Stages (Days After Flowering (DAF)) | Ricinus communis Endosperm (En) Stages & Embryo (Em) | Euonymus alatus Endosperm (En) Stages & Embryo (Em) | Tropaeolum majus Embryo (Em) Stages (Days post antithesis (DPA)) | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus ID | Abbrev. | Em I 14-20 DAF |
Em II 21-25 DAF |
Em III 25-30 DAF |
Em IV 31-35 DAF |
En I Stage III |
En II Stage IV |
En III Stage VI |
En IV Stages VII-VIII |
Em | En I Stage IV |
En II Stage VI |
En III Stages VII-VIII |
En IV Stages 9/19 |
Em | Em I 16 DPA |
Em II 18 DPA |
Em III 22 DPA |
Em IV 25 DPA |
| At1g18280 | LTP type 5 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||
| At1g27950 | LTPG1 (LTP type 5) | 20 | 13 | 35 | 20 | 13 | 10 | 11 | 17 | 41 | 6 | 6 | 5 | 6 | 101 | 2 | 2 | 0 | 0 |
| At1g48750 | LTP type 2 | 0 | 0 | 0 | 0 | 801 | 1092 | 309 | 34 | 179 | 3 | 7 | 55 | 54 | 28 | 2 | 3 | 0 | 0 |
| At1g55260 | LTP type 5 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | |||||
| At1g62790 | LTP type 5 | 1 | 0 | 0 | 0 | 6 | 3 | 2 | 2 | 2 | 0 | 1 | 1 | 5 | |||||
| At1g73560 | LTP type 5 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 7 | 2 | 0 | 0 | 0 | 0 | |||||
| At1g73890 | LTP type 5 | 0 | 0 | 0 | 0 | ||||||||||||||
| At2g13820 | LTP type 5 | 0 | 0 | 0 | 2 | ||||||||||||||
| At2g18370 | LTP type 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 4 |
| At2g27130 | LTP type 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | |||||||||
| At2g37870 | LTP type 5 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 8 | 1 | 0 | 0 | 0 | |||||
| At2g38530 | LP / LTP2 (LTP type 1) | 170 | 254 | 454 | 192 | 0 | 0 | 0 | 0 | ||||||||||
| At2g38540 | LTP type 1 | 17 | 5 | 1 | 1 | 2 | 0 | 0 | 1 | 1 | 8 | 17 | 38 | 69 | 208 | 107 | 121 | 21 | 52 |
| At2g44290 | LTP type 5 | 0 | 0 | 0 | 0 | 21 | |||||||||||||
| At2g44300 | LTP type 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 23 | |||||||||
| At2g48140 | EDA4 (LTP type 5) | 1 | 2 | 1 | 1 | ||||||||||||||
| At3g08770 | LTP type 1 | 5 | 1 | 0 | 1 | 0 | 1 | 1 | 2 | 37 | |||||||||
| At3g18280 | LTP type 2 | 5 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 4 | 0 | 407 | 489 | 22 | 171 |
| At3g22600 | LTP type 5 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 11 |
| At3g22620 | LTP type 5 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 9 | ||||||||||
| At3g43720 | LTP type 5 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 2 | 1 | 20 | 12 | 12 | 5 | |||||
| At3g51590 | LTP type 1 | 0 | 0 | 0 | 0 | ||||||||||||||
| At3g51600 | LTP type 1 | 19 | 18 | 13 | 12 | ||||||||||||||
| At3g52130 | LTP type 3 | 0 | 0 | 0 | 0 | ||||||||||||||
| At3g53980 | LTP type 4 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 3 |
| At4g08670 | LTP type 5 | 0 | 0 | 0 | 1 | ||||||||||||||
| At4g30880 | LTP type 3 | 4 | 0 | 0 | 0 | 55 | 26 | 18 | 12 | 1 | 45 | 22 | 12 | 6 | 1 | 0 | 0 | 0 | 0 |
| At4g33355 | LTP type 1 | 110 | 57 | 259 | 112 | 20 | 158 | 160 | 351 | 646 | 22 | ||||||||
| At4g33550 | LTP type 3 | 0 | 0 | 0 | 1 | 26 | 0 | 1 | 0 | 0 | 4 | 5 | 1 | 0 | |||||
| At5g01870 | LTP type 1 | 0 | 0 | 0 | 0 | ||||||||||||||
| At5g05960 | LTP type 4 | 3 | 1 | 3 | 3 | 1 | |||||||||||||
| At5g09370 | LTP type 5 | 1 | 2 | 1 | 0 | ||||||||||||||
| At5g48485 | LTP type 3 | 3 | 2 | 0 | 0 | 33 | 0 | 0 | 0 | 0 | 8 | 2 | 0 | 0 | 2 | ||||
| At5g48490 | LTP type 3 | 2 | 0 | 0 | 0 | ||||||||||||||
| At5g52160 | LTP type 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||
| At5g55410 | LTP type 3 | 0 | 0 | 0 | 0 | 5 | 1 | 1 | 1 | 7 | |||||||||
| At5g55450 | LTP type 3 | 10 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | ||||||||||
| At5g55460 | LTP type 3 | 0 | 0 | 0 | 0 | ||||||||||||||
| At5g56480 | LTP type 3 | 14 | 19 | 8 | 31 | ||||||||||||||
| At5g59310 | LTP type 1 | 1 | 1 | 2 | 1 | 2 | 10 | 40 | 65 | 130 | 40 | 146 | 14 | 158 | |||||
| At5g59320 | LTP type 1 | 0 | 0 | 0 | 0 | 23 | 10 | 2 | 1 | 2134 | 34 | 57 | 1355 | 2499 | |||||
| At5g64080 | LTP type 5 | 47 | 57 | 58 | 37 | 68 | 52 | 50 | 22 | 74 | 63 | 39 | 41 | 32 | 103 | 253 | 150 | 21 | 80 |